Index A | B | C | D | E | F | G | I | J | L | M | P | Q | R | S | T | U | V | W A Affine (class in spatialdata.transformations) aggregate() (in module spatialdata) (spatialdata.SpatialData method) align_elements_using_landmarks() (in module spatialdata.transformations) are_extents_equal() (in module spatialdata) assert_elements_are_identical() (in module spatialdata.testing) assert_elements_dict_are_identical() (in module spatialdata.testing) assert_spatial_data_objects_are_identical() (in module spatialdata.testing) attrs (spatialdata.SpatialData property) B BaseTransformation (class in spatialdata.transformations) blobs() (in module spatialdata.datasets) blobs_annotating_element() (in module spatialdata.datasets) bounding_box_query() (in module spatialdata) C concatenate() (in module spatialdata) coordinate_systems (spatialdata.dataloader.ImageTilesDataset property) CurrentPointsFormat (in module spatialdata._io.format) CurrentRasterFormat (in module spatialdata._io.format) CurrentShapesFormat (in module spatialdata._io.format) CurrentTablesFormat (in module spatialdata._io.format) D dataset_index (spatialdata.dataloader.ImageTilesDataset property) dataset_table (spatialdata.dataloader.ImageTilesDataset property) deepcopy() (in module spatialdata) delete_element_from_disk() (spatialdata.SpatialData method) dims (spatialdata.dataloader.ImageTilesDataset property) E elements_are_self_contained() (spatialdata.SpatialData method) elements_paths_in_memory() (spatialdata.SpatialData method) elements_paths_on_disk() (spatialdata.SpatialData method) F filter_by_coordinate_system() (spatialdata.SpatialData method) filter_by_table_query() (in module spatialdata) (spatialdata.SpatialData method) force_2d() (in module spatialdata.models) G gen_elements() (spatialdata.SpatialData method) gen_spatial_elements() (spatialdata.SpatialData method) get() (spatialdata.SpatialData method) get_annotated_regions() (spatialdata.SpatialData static method) get_attrs() (spatialdata.SpatialData method) get_axes_names() (in module spatialdata.models) get_centroids() (in module spatialdata) get_channel_names() (in module spatialdata.models) get_dask_backing_files() (in module spatialdata) get_element_instances() (in module spatialdata) get_extent() (in module spatialdata) get_instance_key_column() (spatialdata.SpatialData static method) get_model() (in module spatialdata.models) get_pyramid_levels() (in module spatialdata) get_region_key_column() (spatialdata.SpatialData static method) get_spatial_axes() (in module spatialdata.models) get_transformation() (in module spatialdata.transformations) get_transformation_between_coordinate_systems() (in module spatialdata.transformations) get_transformation_between_landmarks() (in module spatialdata.transformations) get_values() (in module spatialdata) I Identity (class in spatialdata.transformations) Image2DModel (class in spatialdata.models) Image3DModel (class in spatialdata.models) images (spatialdata.SpatialData property) ImageTilesDataset (class in spatialdata.dataloader) init_from_elements() (spatialdata.SpatialData class method) init_store() (spatialdata._io.format.PointsFormatV01 method) (spatialdata._io.format.RasterFormatV01 method) (spatialdata._io.format.ShapesFormatV01 method) (spatialdata._io.format.ShapesFormatV02 method) (spatialdata._io.format.TablesFormatV01 method) is_backed() (spatialdata.SpatialData method) is_self_contained() (spatialdata.SpatialData method) J join_spatialelement_table() (in module spatialdata) L labels (spatialdata.SpatialData property) Labels2DModel (class in spatialdata.models) Labels3DModel (class in spatialdata.models) locate_element() (spatialdata.SpatialData method) M map_raster() (in module spatialdata) MapAxis (class in spatialdata.transformations) match_element_to_table() (in module spatialdata) match_sdata_to_table() (in module spatialdata) match_table_to_element() (in module spatialdata) module spatialdata P parse() (spatialdata.models.Image2DModel class method) (spatialdata.models.Image3DModel class method) (spatialdata.models.Labels2DModel class method) (spatialdata.models.Labels3DModel class method) (spatialdata.models.PointsModel class method) (spatialdata.models.ShapesModel class method) (spatialdata.models.TableModel class method) path (spatialdata.SpatialData property) points (spatialdata.SpatialData property) points_dask_dataframe_to_geopandas() (in module spatialdata.models) points_geopandas_to_dask_dataframe() (in module spatialdata.models) PointsFormatV01 (class in spatialdata._io.format) PointsModel (class in spatialdata.models) polygon_query() (in module spatialdata) Q query (spatialdata.SpatialData property) R raccoon() (in module spatialdata.datasets) RasterFormatV01 (class in spatialdata._io.format) rasterize() (in module spatialdata) rasterize_bins() (in module spatialdata) rasterize_bins_link_table_to_labels() (in module spatialdata) read() (spatialdata.SpatialData static method) read_zarr() (in module spatialdata) regions (spatialdata.dataloader.ImageTilesDataset property) relabel_sequential() (in module spatialdata) remove_transformation() (in module spatialdata.transformations) remove_transformations_to_coordinate_system() (in module spatialdata.transformations) rename_coordinate_systems() (spatialdata.SpatialData method) S sanitize_name() (in module spatialdata) sanitize_table() (in module spatialdata) Scale (class in spatialdata.transformations) sdata (spatialdata.dataloader.ImageTilesDataset property) Sequence (class in spatialdata.transformations) set_channel_names() (in module spatialdata.models) (spatialdata.SpatialData method) set_table_annotates_spatialelement() (spatialdata.SpatialData method) set_transformation() (in module spatialdata.transformations) shapes (spatialdata.SpatialData property) ShapesFormatV01 (class in spatialdata._io.format) ShapesFormatV02 (class in spatialdata._io.format) ShapesModel (class in spatialdata.models) spatialdata module SpatialData (class in spatialdata) SpatialElement (in module spatialdata.models) subset() (spatialdata.SpatialData method) T TableModel (class in spatialdata.models) tables (spatialdata.SpatialData property) TablesFormatV01 (class in spatialdata._io.format) tiles_coords (spatialdata.dataloader.ImageTilesDataset property) to_circles() (in module spatialdata) to_polygons() (in module spatialdata) transform() (in module spatialdata) transform_element_to_coordinate_system() (spatialdata.SpatialData method) transform_to_coordinate_system() (spatialdata.SpatialData method) Translation (class in spatialdata.transformations) U unpad_raster() (in module spatialdata) update_annotated_regions_metadata() (spatialdata.SpatialData static method) V validate() (spatialdata.models.Image2DModel class method) (spatialdata.models.Image3DModel class method) (spatialdata.models.Labels2DModel class method) (spatialdata.models.Labels3DModel class method) (spatialdata.models.PointsModel class method) (spatialdata.models.ShapesModel class method) (spatialdata.models.TableModel class method) validate_axes() (spatialdata.transformations.Affine static method) (spatialdata.transformations.BaseTransformation static method) (spatialdata.transformations.Identity static method) (spatialdata.transformations.MapAxis static method) (spatialdata.transformations.Scale static method) (spatialdata.transformations.Sequence static method) (spatialdata.transformations.Translation static method) validate_coordinate_transformations() (spatialdata._io.format.PointsFormatV01 method) (spatialdata._io.format.RasterFormatV01 method) (spatialdata._io.format.ShapesFormatV01 method) (spatialdata._io.format.ShapesFormatV02 method) (spatialdata._io.format.TablesFormatV01 method) validate_shapes_not_mixed_types() (spatialdata.models.ShapesModel class method) validate_table_in_spatialdata() (spatialdata.SpatialData method) W write() (spatialdata.SpatialData method) write_channel_names() (spatialdata.SpatialData method) write_element() (spatialdata.SpatialData method) write_metadata() (spatialdata.SpatialData method) write_transformations() (spatialdata.SpatialData method)
