spatialdata_io.experimental.from_legacy_anndata

spatialdata_io.experimental.from_legacy_anndata#

spatialdata_io.experimental.from_legacy_anndata(adata)#

Convert (legacy) spatial AnnData object to SpatialData object.

This is useful for parsing a (legacy) spatial AnnData object, for example the ones produced by Scanpy and older version of Squidpy.

Parameters:

adata (AnnData) – (legacy) spatial AnnData object

Return type:

SpatialData

Returns:

: The SpatialData object

Notes

The SpatialData object will have one hires and one lowres image for each dataset in the AnnData object.