spatialdata_io.mcmicro

spatialdata_io.mcmicro(path, imread_kwargs=mappingproxy({}), image_models_kwargs=mappingproxy({}), labels_models_kwargs=mappingproxy({}))

Read a Mcmicro output into a SpatialData object.

See also

• Mcmicro pipeline.

Parameters:

• path (str | Path) – Path to the dataset.

• imread_kwargs (Mapping[str, Any] (default: mappingproxy({}))) – Keyword arguments to pass to the image reader.

• image_models_kwargs (Mapping[str, Any] (default: mappingproxy({}))) – Keyword arguments to pass to the image models.

• labels_models_kwargs (Mapping[str, Any] (default: mappingproxy({}))) – Keyword arguments to pass to the labels models

Return type:

SpatialData

Returns:

: spatialdata.SpatialData