spatialdata_io.steinbock

spatialdata_io.steinbock(path, labels_kind='deepcell', imread_kwargs=mappingproxy({}), image_models_kwargs=mappingproxy({}))

Read a Steinbock output into a SpatialData object.

See also

• Steinbock pipeline.

Parameters:

• path (str | Path) – Path to the dataset.

• labels_kind (Literal[‘deepcell’, ‘ilastik’] (default: 'deepcell')) – Kind of labels to use. Either deepcell or ilastik.

• imread_kwargs (Mapping[str, Any] (default: mappingproxy({}))) – Keyword arguments to pass to the image reader.

• image_models_kwargs (Mapping[str, Any] (default: mappingproxy({}))) – Keyword arguments to pass to the image models.

Return type:

SpatialData

Returns:

: spatialdata.SpatialData