napari_spatialdata.Interactive#

class napari_spatialdata.Interactive(sdata, headless=False)#

Interactive visualization of spatial data.

Parameters:

sdata SpatialData | list[SpatialData]: SpatialData object.
headless bool (default: False): Run napari in headless mode, default False.

Returns:

None

Methods table#

`add_element`(element, element_coordinate_system)	Add an element of a spatial data object being visualized with interactive to the viewer.
`add_text_to_polygons`(layer_name, ...)	Add text annotations to a polygon layer.
`get_layer`(layer_name)	Get a layer by name.
`run`()	Run the napari application.
`screenshot`()	Take a screenshot of the viewer in its current state.
`switch_coordinate_system`(coordinate_system)	Switch to a coordinate system present in the spatialdata object(s).

Interactive.add_element(element, element_coordinate_system, view_element_system=False)#

Add an element of a spatial data object being visualized with interactive to the viewer.

Parameters:

element str: The name of the element in the spatial data object to add as napari layer.
element_coordinate_system str: The coordinate system in which the layer should be visualized.
view_element_system bool (default: False): Whether to switch to element_coordinate_system or to switch back to current active coordinate system after adding an element as layer.

Return type:

None

Interactive.add_text_to_polygons(layer_name, text_annotations)#

Add text annotations to a polygon layer.

Interactive.get_layer(layer_name)#

Get a layer by name.

Interactive.run()#

Run the napari application.

Interactive.screenshot()#

Take a screenshot of the viewer in its current state.

Interactive.switch_coordinate_system(coordinate_system)#

Switch to a coordinate system present in the spatialdata object(s).