Changelog#

All notable changes to this project will be documented in this file.

The format is based on Keep a Changelog, and this project adheres to Semantic Versioning.

[0.0.x] - tbd#

Added#

  • added SpatialData.subset() API

  • added SpatialData.locate_element() API

  • added transform_to_data_extent()

  • added utils function: are_extents_equal()

  • added utils function: postpone_transformation()

  • added utils function: remove_transformations_to_coordinate_system()

Minor#

  • improved usability and robustness of sdata.write() when overwrite=True @aeisenbarth

Fixed#

  • generalized queries to any combination of 2D/3D data and 2D/3D query region #409

  • fixed warnings for categorical dtypes in tables in TableModel and PointsModel

Minor#

  • refactored data loader for deep learning

[0.0.14] - 2023-10-11#

Added#

Minor#

  • new API: sdata.rename_coordinate_systems()

Technical#

  • decompose affine transformation into simpler transformations

  • remove padding for blobs()

Major#

  • get_extent() function to compute bounding box of the data

Minor#

  • testing against pre-release packages

Fixed#

  • Fixed bug with get_values(): ignoring background channel in labels

[0.0.13] - 2023-10-02#

Added#

  • polygon_query() support for images #358

Fixed#

  • Fix missing c_coords argument in blobs multiscale #342

  • Replaced hardcoded string with instance_key #346

[0.0.12] - 2023-06-24#

Added#

  • Add multichannel blobs sample data (by @melonora)

[0.0.11] - 2023-06-21#

Improved#

  • Aggregation APIs.

[0.0.10] - 2023-06-06#

Fixed#

  • Fix blobs (#282)

[0.0.9] - 2023-05-23#

Updated#

  • Update napari-spatialdata pin (#279)

  • pin typing-extensions

[0.0.8] - 2023-05-22#

Merged#

  • Merge pull request #271 from scverse/fix/aggregation

[0.0.7] - 2023-05-20#

Updated#

  • Update readme

[0.0.6] - 2023-05-10#

Added#

  • This release adds polygon spatial query.

[0.0.5] - 2023-05-05#

Fixed#

  • fix tests badge (#242)

[0.0.4] - 2023-05-04#

Tested#

  • This release tests distribution via pypi

[0.0.3] - 2023-05-02#

Added#

  • This is an alpha release to test the release process.

[0.0.2] - 2023-05-02#

Added#

  • make version dynamic

[0.0.1.dev1] - 2023-03-25#

Added#

  • Dev version, not official release yet