An open and universal framework for processing spatial omics data.#
SpatialData is a data framework that comprises a FAIR storage format and a collection of python libraries for performant access, alignment, and processing of uni- and multi-modal spatial omics datasets. This page provides documentation on how to install, use, and extend the core spatialdata library. See the links below to learn more about other packages in the SpatialData ecosystem.
spatialdata-io: load data from common spatial omics technologies into
spatialdata.spatialdata-plot: Static plotting library for
spatialdata.napari-spatialdata: napari plugin for interactive exploration and annotation of
spatialdata.
Note
This library is currently under active development. We may make changes to the API between versions as the community provides feedback. To ensure reproducibility, please make note of the version you are developing against.